Top Triggers of Autoimmune Flares
- Dr Bret Ellington DACM, CFMP, LAc

- Jan 5, 2021
- 2 min read

Why Autoimmune Symptoms Fluctuate
Autoimmune diseases rarely remain constant. Many patients experience periods where symptoms worsen, followed by times where they feel relatively stable. These changes are not random.
Autoimmune flares are often driven by underlying triggers that increase inflammation and immune activity. Identifying and reducing these triggers is one of the most effective ways to improve symptom stability.
At Inner Balance Functional Medicine, we help patients recognize patterns behind their flares rather than viewing them as unpredictable.
What triggers autoimmune flares?
Common autoimmune flare triggers include stress, poor sleep, infections, food sensitivities, blood sugar instability, and environmental toxins.
Most Common Autoimmune Triggers
1. Chronic Stress
Stress affects the immune system directly. Elevated cortisol can dysregulate immune signaling and increase inflammation.
2. Poor Sleep
Sleep is when the body repairs and regulates immune activity. Poor sleep can worsen inflammation and immune reactivity.
3. Gut Dysfunction
Gut imbalance can increase immune activation and contribute to flare-ups.
4. Blood Sugar Swings
Unstable blood sugar increases inflammatory stress and hormone imbalance.
5. Infections
Viral or bacterial infections can trigger or worsen autoimmune symptoms.
6. Food Sensitivities
Certain foods may trigger immune responses in sensitive individuals.
7. Environmental Toxins
Chemical exposure can increase immune stress and inflammation.
If your symptoms flare in cycles, it is often because one or more of these triggers is present.
Why Identifying Triggers Matters
When triggers are not addressed:
Inflammation remains elevated
Symptoms become unpredictable
Recovery slows
The immune system stays reactive
When triggers are identified:
Flares become less frequent
Symptoms stabilize
The body becomes more resilient
Functional Medicine Approach
We look for patterns rather than isolated symptoms.
This may include:
Reviewing symptom timing
Identifying lifestyle triggers
Assessing stress and sleep patterns
Evaluating gut health
Supporting immune balance
Check out some of our other related blogs
Reduce your autoimmune triggers and create more stable health patterns. Let’s have a conversation about your longterm health goals. Book your complementary functional medicine consultation and let’s identify exactly what your body needs!




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